scientific discovery
AutoSciDACT: Automated Scientific Discovery through Contrastive Embedding and Hypothesis Testing
Novelty detection in large scientific datasets faces two key challenges: the noisy and high-dimensional nature of experimental data, and the necessity of making statistically robust statements about any observed outliers. While there is a wealth of literature on anomaly detection via dimensionality reduction, most methods do not produce outputs compatible with quantifiable claims of scientific discovery. In this work we directly address these challenges, presenting the first step towards a unified pipeline for novelty detection adapted for the rigorous statistical demands of science. We introduce AutoSciDACT (Automated Scientific Discovery with Anomalous Contrastive Testing), a general-purpose pipeline for detecting novelty in scientific data. AutoSciDACT begins by creating expressive low-dimensional data representations using a contrastive pre-training, leveraging the abundance of highquality simulated data in many scientific domains alongside expertise that can guide principled data augmentation strategies. These compact embeddings then enable an extremely sensitive machine learning-based two-sample test using the New Physics Learning Machine (NPLM) framework, which identifies and statistically quantifies deviations in observed data relative to a reference distribution (null hypothesis). We perform experiments across a range of astronomical, physical, biological, image, and synthetic datasets, demonstrating strong sensitivity to small injections of anomalous data across all domains.
Learning Interestingness in Automated Mathematical Theory Formation
We take two key steps in automating the open-ended discovery of new mathematical theories, a grand challenge in artificial intelligence. First, we introduce FERMAT, a reinforcement learning (RL) environment that models concept discovery and theorem-proving using a set of symbolic actions, opening up a range of RL problems relevant to theory discovery. Second, we explore a specific problem through FERMAT: automatically scoring the interestingness of mathematical objects. We investigate evolutionary algorithms for synthesizing nontrivial interestingness measures. In particular, we introduce an LLM-based evolutionary algorithm that features function abstraction, leading to notable improvements in discovering elementary number theory and finite fields over hard-coded baselines.
Looking Beyond the Known: Towards a Data Discovery Guided Open-World Object Detection
Open-World Object Detection (OWOD) enriches traditional object detectors by enabling continual discovery and integration of unknown objects via human guidance. However, existing OWOD approaches frequently suffer from semantic confusion between known and unknown classes, alongside catastrophic forgetting, leading to diminished unknown recall and degraded known-class accuracy. To overcome these challenges, we propose Combinatorial Open-World Detection (CROWD2), a unified framework reformulating unknown object discovery and adaptation as an interwoven combinatorial (set-based) data-discovery (CROWD-Discover) and representation learning (CROWD-Learn) task. CROWD-Discover strategically mines unknown instances by maximizing Submodular Conditional Gain (SCG) functions, selecting representative examples distinctly dissimilar from known objects. Subsequently, CROWD-Learn employs novel combinatorial objectives that jointly disentangle known and unknown representations while maintaining discriminative coherence among known classes, thus mitigating confusion and forgetting. Extensive evaluations on OWOD benchmarks illustrate that CROWD achieves improvements of 2.83% and 2.05% in known-class accuracy on M-OWODB and S-OWODB, respectively, and nearly 2.4 unknown recall compared to leading baselines. Figure 1: Overall Architecture of CROWD showing our novel combinatorial data-discovery guided representation learning approach to (a) identify unknown objects3 and (b) learn distinguishable representations of both known and unknown objects.
MLR-Bench: Evaluating AI Agents on Open-Ended Machine Learning Research
Recent advancements in AI agents have demonstrated their growing potential to drive and support scientific discovery. In this work, we introduce MLR-Bench, a comprehensive benchmark for evaluating AI agents on open-ended machine learning research. MLR-Bench includes three key components: (1) 201 research tasks sourced from NeurIPS, ICLR, and ICML workshops covering diverse ML topics; (2) MLR-Judge, an automated evaluation framework combining LLM-based reviewers with carefully designed review rubrics to assess research quality; and (3) MLR-Agent, a modular agent scaffold capable of completing research tasks through four stages: idea generation, proposal formulation, experimentation, and paper writing. Our framework supports both stepwise assessment across these distinct research stages, and end-to-end evaluation of the final research paper. We then use MLR-Bench to evaluate six frontier LLMs and an advanced coding agent, finding that while LLMs are effective at generating coherent ideas and well-structured papers, current coding agents frequently (e.g., in 80\% of the cases) produce fabricated or invalidated experimental results--posing a major barrier to scientific reliability.
ChemX: A Collection of Chemistry Datasets for Benchmarking Automated Information Extraction
Despite recent advances in machine learning, many scientific discoveries in chemistry still rely on manually curated datasets extracted from the scientific literature. Automation of information extraction in specialized chemistry domains has the potential to scale up machine learning applications and improve the quality of predictions, enabling data-driven scientific discoveries at a faster pace. In this paper, we present ChemX, a collection of 10 benchmarking datasets across several domains of chemistry providing a reliable basis for evaluating and fine-tuning automated information extraction methods. The datasets encompassing various properties of small molecules and nanomaterials have been manually extracted from peer-reviewed publications and systematically validated by domain experts through a cross-verification procedure allowing for identification and correction of errors at sources. In order to demonstrate the utility of the resulting datasets, we evaluate the extraction performance of the state-of-the-art large language models (LLMs). Moreover, we design our own agentic approach to take full control of the document preprocessing before LLM-based information extraction.
AutoSciDACT: Automated Scientific Discovery through Contrastive Embedding and Hypothesis Testing
Novelty detection in large scientific datasets faces two key challenges: the noisy and high-dimensional nature of experimental data, and the necessity of making statements about any observed outliers. While there is a wealth of literature on anomaly detection via dimensionality reduction, most methods do not produce outputs compatible with quantifiable claims of scientific discovery. In this work we directly address these challenges, presenting the first step towards a unified pipeline for novelty detection adapted for the rigorous statistical demands of science. We introduce AutoSciDACT (Automated Scientific Discovery with Anomalous Contrastive Testing), a general-purpose pipeline for detecting novelty in scientific data. AutoSciDACT begins by creating expressive low-dimensional data representations using a contrastive pre-training, leveraging the abundance of high-quality simulated data in many scientific domains alongside expertise that can guide principled data augmentation strategies. These compact embeddings then enable an extremely sensitive machine learning-based two-sample test using the New Physics Learning Machine (NPLM) framework, which identifies and statistically quantifies deviations in observed data relative to a reference distribution (null hypothesis). We perform experiments across a range of astronomical, physical, biological, image, and synthetic datasets, demonstrating strong sensitivity to small injections of anomalous data across all domains.
Why Real-Life Disclosure Day Will Look Nothing Like Steven Spielberg's New Movie
Why Real-Life Disclosure Day Will Look Nothing Like Steven Spielberg's New Movie Previous landmark scientific discoveries like the Higgs boson provide a better template for what it will take to confirm whether aliens have made contact with Earth. Steven Spielberg's new film imagines the moment 8 billion humans find out that we are not alone in the universe. The movie, which opens in US theaters on June 12, is a fictional account of the government cover-up and subsequent "disclosure" of evidence that aliens have contacted Earth. The UFO community has been chasing that type of cinematic big reveal for 80 years. But it's more likely that monumental scientific discoveries, like the detection of the Higgs boson in 2012 and the confirmation of gravitational waves in 2016, are a better guideline for how real-world disclosure is likely to play out: through long-running research and with verifiable results.
Foundation Models for Scientific Discovery: From Paradigm Enhancement to Paradigm Transition
Foundation models (FMs), such as GPT-4 and AlphaFold, are reshaping the landscape of scientific research. Beyond accelerating tasks such as hypothesis generation, experimental design, and result interpretation, they prompt a more fundamental question: Are FMs merely enhancing existing scientific methodologies, or are they redefining the way science is conducted? In this paper, we argue that FMs are catalyzing a transition toward a new scientific paradigm. We introduce a three-stage framework to describe this evolution: (1) Meta-Scientific Integration, where FMs enhance workflows within traditional paradigms; (2) Hybrid Human-AI Co-Creation, where FMs become active collaborators in problem formulation, reasoning, and discovery; and (3) Autonomous Scientific Discovery, where FMs operate as independent agents capable of generating new scientific knowledge with minimal human intervention. Through this lens, we review current applications and emerging capabilities of FMs across existing scientific paradigms. We further identify risks and future directions for FM-enabled scientific discovery. This position paper aims to support the scientific community in understanding the transformative role of FMs and to foster reflection on the future of scientific discovery.
PhysGym: Benchmarking LLMs in Interactive Physics Discovery with Controlled Priors
Evaluating the scientific discovery capabilities of large language model based agents, particularly how they cope with varying environmental complexity and utilize prior knowledge, requires specialized benchmarks currently lacking in the landscape. To address this gap, we introduce PhysGym, a novel benchmark suite and simulation platform for rigorously assessing LLM-based scientific reasoning in interactive physics environments. PhysGym's primary contribution lies in its sophisticated control over the level of prior knowledge provided to the agent. This allows researchers to dissect agent performance along axes including the complexity of the problem and the prior knowledge levels. The benchmark comprises a suite of interactive simulations, where agents must actively probe environments, gather data sequentially under constraints and formulate hypotheses about underlying physical laws. PhysGym provides standardized evaluation protocols and metrics for assessing hypothesis accuracy and model fidelity. We demonstrate the benchmark's utility by presenting results from baseline LLMs, showcasing its ability to differentiate capabilities based on varying priors and task complexity.
Learning Interestingness in Automated Mathematical Theory Formation
We take two key steps in automating the open-ended discovery of new mathematical theories, a grand challenge in artificial intelligence. First, we introduce Fermat, a reinforcement learning (RL) environment that models concept discovery and theorem-proving using a set of symbolic actions, opening up a range of RL problems relevant to theory discovery. Second, we explore a specific problem through Fermat: automatically scoring the interestingness of mathematical objects. We investigate evolutionary algorithms for synthesizing nontrivial interestingness measures. In particular, we introduce an LLM-based evolutionary algorithm that features function abstraction, leading to notable improvements in discovering elementary number theory and finite fields over hard-coded baselines.